PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000151862
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 342aa    MW: 38934.3 Da    PI: 7.4211
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000151862genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-05181200120
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                    ++Cp C k+F+r  n++ H+
  MDP0000151862 181 FSCPVCYKTFNRYNNMQMHM 200
                    89*****************9 PP

2zf-C2H2120.00065265287123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C +C k F  + + ++H +++
  MDP0000151862 265 FTCRKCXKAFAVRGDWRTHEKNC 287
                    89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.41E-5173203No hitNo description
PROSITE profilePS501579.743181208IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.9E-6181200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.45181203IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280183203IPR007087Zinc finger, C2H2
SuperFamilySSF576671.01E-5247285No hitNo description
Gene3DG3DSA:3.30.160.607.8E-5252285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035569265285IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MNMNHHLQTL SRLLMLHNLL LPMLTTSSST KTTLFTSLPT NKSLTLDPLP LLSEKPSPLX  60
SRLSPTNQHH HHRXHEDQQQ HHHEDHHHFK DQQDEEDGDG EDDESVTLHI GLPNPSAAEM  120
ASVLSAAANS SSSEMSNNST HHEKSDHGDH DSAGYPMSCR LNKGQYWXPT PSQILIGPTQ  180
FSCPVCYKTF NRYNNMQMHM WGHGSQYRKG PESLRGTQPT GMLRLPCYCC TPGCRXNIDH  240
PRAKPLKDFR TLQTHYKRKH GIKPFTCRKC XKAFAVRGDW RTHEKNCGKL WYCICGSDFK  300
HKRSLKDHIK AFGNGHAAYG IDGFEEEDEP ASEVEQDNES MQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.164370.0bud| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008392201.10.0PREDICTED: protein TRANSPARENT TESTA 1-like
SwissprotQ9SVY11e-138ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLM5VRC21e-161M5VRC2_PRUPE; Uncharacterized protein
STRINGVIT_08s0007g08070.t011e-151(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-132C2H2 family protein